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Jonathan Miller 033e948c79
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Platform: mokoplatform CI / Gate 1: Code Quality (pull_request) Failing after 1m8s
feat: security advisory aggregator, manifest API rewrite, namespace rename (#150, #283)
- Add `security:advisories` command — cross-repo CVE scanner via composer audit
  with checkpoint resumability, severity filtering, and auto-issue creation
- Rewrite `manifest:read` to use Gitea manifest API as primary source with
  auto-detection fallback from source tree (no more manifest.xml dependency)
- Rename MokoStandards namespace → MokoCli across all files
- Rename MokoEnterprise namespace → MokoCli across all files
- Rename MokoStandardsParser class → ManifestParser
- Fix composer.json autoload paths: src/ → source/
2026-06-20 20:24:58 -05:00

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#!/usr/bin/env php
<?php
/**
* Copyright (C) 2026 Moko Consulting <hello@mokoconsulting.tech>
*
* This file is part of a Moko Consulting project.
*
* SPDX-License-Identifier: GPL-3.0-or-later
*
* FILE INFORMATION
* DEFGROUP: MokoPlatform.Scripts.Validate
* INGROUP: MokoPlatform
* REPO: https://git.mokoconsulting.tech/MokoConsulting/mokoplatform
* PATH: /validate/scan_drift.php
* BRIEF: Standards drift detection - scans repositories for divergence from templates
*/
declare(strict_types=1);
require_once __DIR__ . '/../vendor/autoload.php';
use MokoCli\{
ApiClient,
AuditLogger,
CliFramework,
MetricsCollector
};
/**
* Standards Drift Scanner
*
* Scans repositories for drift from mokoplatform templates
*/
class DriftScanner extends CliFramework
{
private const VERSION = '09.23.00';
private const DEFAULT_ORG = 'mokoconsulting-tech';
private ApiClient $apiClient;
private MetricsCollector $metrics;
private \MokoCli\GitPlatformAdapter $adapter;
private array $driftResults = [];
private array $templates = [];
protected function configure(): void
{
$this->setDescription('Scan repositories for standards drift');
$this->addArgument('--org', 'GitHub organization', self::DEFAULT_ORG);
$this->addArgument('--repos', 'Specific repositories (comma-separated)', '');
$this->addArgument('--type', 'Filter by repository type', '');
$this->addArgument('--create-issues', 'Create GitHub issues for drift', false);
$this->addArgument('--threshold', 'Drift score threshold (0-100)', '20');
$this->addArgument('--json', 'Output as JSON', false);
}
protected function initialize(): void
{
parent::initialize();
$this->metrics = new MetricsCollector();
// Initialize API client via platform adapter
$config = \MokoCli\Config::load();
try {
$this->adapter = \MokoCli\PlatformAdapterFactory::create($config);
$this->apiClient = $this->adapter->getApiClient();
} catch (\Exception $e) {
$this->error("Platform initialization failed: " . $e->getMessage());
exit(1);
}
$this->log("Standards Drift Scanner v" . self::VERSION);
}
protected function run(): int
{
$org = $this->getArgument('--org');
$repos = $this->getArgument('--repos');
$type = $this->getArgument('--type');
$createIssues = $this->getArgument('--create-issues');
$threshold = (float)$this->getArgument('--threshold');
$jsonOutput = $this->getArgument('--json');
$this->log("Scanning organization: {$org}");
// Load templates
$this->loadTemplates();
// Get repositories to scan
$repositories = $this->getRepositories($org, $repos, $type);
if (empty($repositories)) {
$this->warn("No repositories found to scan");
return 0;
}
$this->log("Found " . count($repositories) . " repositories to scan");
// Scan each repository
$this->section('Scanning repositories');
$total = count($repositories);
$i = 0;
foreach ($repositories as $repo) {
$this->progress(++$i, $total, (string) $repo);
$this->scanRepository($org, $repo);
}
if ($total >= 3) {
$this->progress($total, $total, 'done', true);
}
// Generate report
if ($jsonOutput) {
echo json_encode($this->driftResults, JSON_PRETTY_PRINT) . PHP_EOL;
} else {
$this->displayReport($threshold);
}
// Create issues if requested
if ($createIssues) {
$this->createDriftIssues($org, $threshold);
}
// Record metrics
$this->recordMetrics();
// Return exit code based on drift threshold
$highDriftCount = count(array_filter(
$this->driftResults,
fn($r) => $r['drift_score'] >= $threshold
));
return $highDriftCount > 0 ? 1 : 0;
}
private function loadTemplates(): void
{
$this->log("Loading templates...");
$templatesDir = __DIR__ . '/../../templates';
// Workflows
$workflowsDir = "{$templatesDir}/workflows";
if (is_dir($workflowsDir)) {
$this->templates['workflows'] = $this->scanTemplateDirectory($workflowsDir);
}
// GitHub configs
$githubDir = "{$templatesDir}/github";
if (is_dir($githubDir)) {
$this->templates['github'] = $this->scanTemplateDirectory($githubDir);
}
// Issue templates
$issueTemplatesDir = "{$templatesDir}/ISSUE_TEMPLATE";
if (is_dir($issueTemplatesDir)) {
$this->templates['issue_templates'] = $this->scanTemplateDirectory($issueTemplatesDir);
}
$totalTemplates = array_sum(array_map('count', $this->templates));
$this->log("Loaded {$totalTemplates} templates");
}
private function scanTemplateDirectory(string $dir): array
{
$templates = [];
$iterator = new RecursiveIteratorIterator(
new RecursiveDirectoryIterator($dir, RecursiveDirectoryIterator::SKIP_DOTS)
);
foreach ($iterator as $file) {
if ($file->isFile()) {
$relativePath = substr($file->getPathname(), strlen($dir) + 1);
$templates[$relativePath] = [
'path' => $file->getPathname(),
'size' => $file->getSize(),
'mtime' => $file->getMTime(),
];
}
}
return $templates;
}
private function getRepositories(string $org, string $repoFilter, string $typeFilter): array
{
if (!empty($repoFilter)) {
return array_map('trim', explode(',', $repoFilter));
}
// Fetch all repositories from GitHub
try {
$response = $this->apiClient->get("/orgs/{$org}/repos", [
'type' => 'all',
'per_page' => 100,
]);
$repos = array_map(fn($r) => $r['name'], $response);
// Filter by type if specified
if (!empty($typeFilter)) {
$repos = array_filter($repos, function ($repo) use ($org, $typeFilter) {
$repoType = $this->detectRepositoryType($org, $repo);
return $repoType === $typeFilter;
});
}
return $repos;
} catch (Exception $e) {
$this->error("Failed to fetch repositories: " . $e->getMessage());
return [];
}
}
private function detectRepositoryType(string $org, string $repo): string
{
// Try to read override.tf to determine type
try {
$override = $this->apiClient->get("/repos/{$org}/{$repo}/contents/.github/override.tf");
if (!empty($override['content'])) {
$content = base64_decode($override['content']);
if (preg_match('/repository_type\s*=\s*"([^"]+)"/', $content, $matches)) {
return $matches[1];
}
}
} catch (Exception $e) {
// Override file doesn't exist, try to detect from files
}
// Detect from file presence
try {
// Check for package.json (nodejs)
$this->apiClient->get("/repos/{$org}/{$repo}/contents/package.json");
return 'nodejs';
} catch (Exception $e) {
}
try {
// Check for terraform files
$files = $this->apiClient->get("/repos/{$org}/{$repo}/contents");
foreach ($files as $file) {
if (str_ends_with($file['name'], '.tf')) {
return 'terraform';
}
}
} catch (Exception $e) {
}
return 'generic';
}
private function scanRepository(string $org, string $repo): void
{
$this->log("Scanning {$repo}...");
$drift = [
'repository' => $repo,
'type' => $this->detectRepositoryType($org, $repo),
'drift_score' => 0,
'missing_files' => [],
'outdated_files' => [],
'modified_files' => [],
'total_files_checked' => 0,
];
// Get override configuration
$overrideConfig = $this->getOverrideConfig($org, $repo);
$protectedFiles = $overrideConfig['protected_files'] ?? [];
$syncExclusions = $overrideConfig['sync_exclusions'] ?? [];
// Check workflows — scan both .github/workflows and .gitea/workflows
$drift = $this->checkFileCategory($org, $repo, 'workflows', '.github/workflows', $drift, $protectedFiles, $syncExclusions);
$drift = $this->checkFileCategory($org, $repo, 'workflows_gitea', '.mokogitea/workflows', $drift, $protectedFiles, $syncExclusions);
// Check GitHub configs
$drift = $this->checkFileCategory($org, $repo, 'github', '.github', $drift, $protectedFiles, $syncExclusions);
// Check issue templates
$drift = $this->checkFileCategory($org, $repo, 'issue_templates', '.github/ISSUE_TEMPLATE', $drift, $protectedFiles, $syncExclusions);
// Calculate drift score (0-100)
$drift['drift_score'] = $this->calculateDriftScore($drift);
// Determine drift level
$drift['drift_level'] = $this->getDriftLevel($drift['drift_score']);
$this->driftResults[$repo] = $drift;
$this->log(" Drift score: {$drift['drift_score']} ({$drift['drift_level']})");
}
private function getOverrideConfig(string $org, string $repo): array
{
try {
$override = $this->apiClient->get("/repos/{$org}/{$repo}/contents/.github/override.tf");
if (!empty($override['content'])) {
$content = base64_decode($override['content']);
// Parse Terraform HCL (simplified parsing)
$config = [
'protected_files' => [],
'sync_exclusions' => [],
];
// Extract protected_files array
if (preg_match('/protected_files\s*=\s*\[(.*?)\]/s', $content, $matches)) {
$items = explode(',', $matches[1]);
foreach ($items as $item) {
if (preg_match('/"([^"]+)"/', trim($item), $m)) {
$config['protected_files'][] = $m[1];
}
}
}
// Extract sync_exclusions array
if (preg_match('/sync_exclusions\s*=\s*\[(.*?)\]/s', $content, $matches)) {
$items = explode(',', $matches[1]);
foreach ($items as $item) {
if (preg_match('/"([^"]+)"/', trim($item), $m)) {
$config['sync_exclusions'][] = $m[1];
}
}
}
return $config;
}
} catch (Exception $e) {
// No override file
}
return [];
}
private function checkFileCategory(
string $org,
string $repo,
string $category,
string $remotePath,
array $drift,
array $protectedFiles,
array $syncExclusions
): array {
if (!isset($this->templates[$category])) {
return $drift;
}
foreach ($this->templates[$category] as $templateFile => $templateInfo) {
$remoteFile = $remotePath . '/' . str_replace('.template', '', $templateFile);
// Skip if excluded or protected
if (in_array($remoteFile, $syncExclusions) || in_array($remoteFile, $protectedFiles)) {
continue;
}
$drift['total_files_checked']++;
try {
$remoteContent = $this->apiClient->get("/repos/{$org}/{$repo}/contents/{$remoteFile}");
if (empty($remoteContent['content'])) {
$drift['missing_files'][] = $remoteFile;
continue;
}
$remoteFileContent = base64_decode($remoteContent['content']);
$templateContent = file_get_contents($templateInfo['path']);
// Remove .template extension content if present
$templateContent = str_replace('.template', '', $templateContent);
// Check for version mismatch
$remoteVersion = $this->extractVersion($remoteFileContent);
$templateVersion = $this->extractVersion($templateContent);
if ($remoteVersion !== $templateVersion && !empty($templateVersion)) {
$drift['outdated_files'][] = [
'file' => $remoteFile,
'current_version' => $remoteVersion ?: 'unknown',
'expected_version' => $templateVersion,
];
} elseif ($this->hasSignificantDifferences($remoteFileContent, $templateContent)) {
$drift['modified_files'][] = $remoteFile;
}
} catch (Exception $e) {
// File doesn't exist in remote
$drift['missing_files'][] = $remoteFile;
}
}
return $drift;
}
private function extractVersion(string $content): ?string
{
if (preg_match('/VERSION:\s*([0-9.]+)/', $content, $matches)) {
return $matches[1];
}
return null;
}
private function hasSignificantDifferences(string $remote, string $template): bool
{
// Normalize whitespace
$remote = preg_replace('/\s+/', ' ', $remote);
$template = preg_replace('/\s+/', ' ', $template);
// Calculate similarity
$similarity = 0;
similar_text($remote, $template, $similarity);
// Consider files with < 90% similarity as significantly different
return $similarity < 90;
}
private function calculateDriftScore(array $drift): float
{
if ($drift['total_files_checked'] === 0) {
return 0;
}
// Weight different types of drift
$missingWeight = 10; // Missing files are most critical
$outdatedWeight = 5; // Outdated versions are high priority
$modifiedWeight = 2; // Modified files are lower priority
$driftPoints =
(count($drift['missing_files']) * $missingWeight) +
(count($drift['outdated_files']) * $outdatedWeight) +
(count($drift['modified_files']) * $modifiedWeight);
// Normalize to 0-100 scale
$maxPoints = $drift['total_files_checked'] * $missingWeight;
$score = min(100, ($driftPoints / max(1, $maxPoints)) * 100);
return round($score, 1);
}
private function getDriftLevel(float $score): string
{
if ($score >= 50) {
return 'critical';
}
if ($score >= 30) {
return 'high';
}
if ($score >= 10) {
return 'medium';
}
return 'low';
}
private function displayReport(float $threshold): void
{
$this->section('Drift report');
$totalRepos = count($this->driftResults);
$driftedRepos = array_filter($this->driftResults, fn($r) => $r['drift_score'] > 0);
$this->log("Total repositories scanned: {$totalRepos}");
$this->log("Repositories with drift: " . count($driftedRepos));
foreach ($this->driftResults as $repo => $drift) {
$detail = sprintf(
'score: %s | missing: %d | outdated: %d | modified: %d',
$drift['drift_score'],
count($drift['missing_files']),
count($drift['outdated_files']),
count($drift['modified_files'])
);
$this->status($drift['drift_score'] < $threshold, (string) $repo, $detail);
}
$highDriftCount = count(array_filter(
$this->driftResults,
fn($r) => $r['drift_score'] >= $threshold
));
$this->printSummary(
$totalRepos - $highDriftCount,
$highDriftCount,
$this->elapsed()
);
}
private function createDriftIssues(string $org, float $threshold): void
{
$this->log("Creating drift issues...");
foreach ($this->driftResults as $repo => $drift) {
if ($drift['drift_score'] < $threshold) {
continue;
}
$this->createDriftIssue($org, $repo, $drift);
}
}
private function createDriftIssue(string $org, string $repo, array $drift): void
{
$icon = match ($drift['drift_level']) {
'critical' => '🚨',
'high' => '⚠️',
'medium' => '🟡',
'low' => '️',
};
$title = "{$icon} Standards Drift Detected: {$drift['drift_level']} ({$drift['drift_score']}%)";
$body = "## Standards Drift Report\n\n";
$body .= "**Repository Type:** `{$drift['type']}`\n";
$body .= "**Drift Score:** {$drift['drift_score']}/100\n";
$body .= "**Drift Level:** {$drift['drift_level']}\n";
$body .= "**Detected:** " . date('Y-m-d H:i:s T') . "\n\n";
if (!empty($drift['missing_files'])) {
$body .= "### ❌ Missing Files (" . count($drift['missing_files']) . ")\n\n";
foreach ($drift['missing_files'] as $file) {
$body .= "- `{$file}`\n";
}
$body .= "\n";
}
if (!empty($drift['outdated_files'])) {
$body .= "### 📅 Outdated Files (" . count($drift['outdated_files']) . ")\n\n";
foreach ($drift['outdated_files'] as $file) {
$body .= "- `{$file['file']}`: {$file['current_version']}{$file['expected_version']}\n";
}
$body .= "\n";
}
if (!empty($drift['modified_files'])) {
$body .= "### ✏️ Modified Files (" . count($drift['modified_files']) . ")\n\n";
foreach ($drift['modified_files'] as $file) {
$body .= "- `{$file}`\n";
}
$body .= "\n";
}
$body .= "### 🔧 Remediation\n\n";
$body .= "To fix this drift:\n\n";
$body .= "1. **Option 1:** Run bulk sync to update all files automatically\n";
$body .= " ```bash\n";
$body .= " # From mokoplatform repository\n";
$body .= " php automation/bulk_sync.php --repos=\"{$repo}\"\n";
$body .= " ```\n\n";
$body .= "2. **Option 2:** If changes are intentional, update `.github/override.tf` to exclude files\n\n";
$body .= "3. **Option 3:** Manually update files to match templates\n\n";
$body .= "---\n";
$body .= "*This issue was automatically created by the standards drift scanner.*\n";
$labels = ['standards-drift', "drift-{$drift['drift_level']}", 'type: chore', 'automation'];
try {
// Check for an existing drift issue to avoid duplicates
$existing = $this->apiClient->get("/repos/{$org}/{$repo}/issues", [
'labels' => 'standards-drift',
'state' => 'all',
'per_page' => 1,
'sort' => 'created',
'direction' => 'desc',
]);
$existing = array_values($existing);
if (!empty($existing) && isset($existing[0]['number'])) {
$num = $existing[0]['number'];
$patch = ['title' => $title, 'body' => $body, 'assignees' => ['jmiller']];
if (($existing[0]['state'] ?? 'open') === 'closed') {
$patch['state'] = 'open';
}
$this->apiClient->patch("/repos/{$org}/{$repo}/issues/{$num}", $patch);
try {
$this->apiClient->post("/repos/{$org}/{$repo}/issues/{$num}/labels", ['labels' => $labels]);
} catch (Exception $le) {
/* non-fatal */
}
$this->log(" Updated drift issue #{$num} in {$repo}");
} else {
$issue = $this->apiClient->post("/repos/{$org}/{$repo}/issues", [
'title' => $title,
'body' => $body,
'labels' => $labels,
'assignees' => ['jmiller'],
]);
$num = $issue['number'] ?? '?';
$this->log(" Created drift issue #{$num} in {$repo}");
}
} catch (Exception $e) {
$this->error(" Failed to create/update issue in {$repo}: " . $e->getMessage());
}
}
private function recordMetrics(): void
{
$this->metrics->setGauge('drift_scan_total_repos', count($this->driftResults));
$this->metrics->setGauge('drift_scan_drifted_repos', count(array_filter(
$this->driftResults,
fn($r) => $r['drift_score'] > 0
)));
foreach (['critical', 'high', 'medium', 'low'] as $level) {
$count = count(array_filter(
$this->driftResults,
fn($r) => $r['drift_level'] === $level
));
$this->metrics->setGauge("drift_scan_{$level}_repos", $count);
}
}
}
// Run the application
$app = new DriftScanner();
exit($app->execute());